Conference Papers
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Item A Deep Learning Model for the Automatic Detection of Malignancy in Effusion Cytology(Institute of Electrical and Electronics Engineers Inc., 2020) Aboobacker, S.; Vijayasenan, D.; Sumam David, S.; Suresh, P.K.; Sreeram, S.The excessive accumulation of fluid between layers of pleura covering lungs is known as pleural effusion. Pleural effusion may be due to various infections, inflammations or malignancy. The cytologists visually examine the microscopic slide to detect the malignant cells. The process is time-consuming, and interpretation of reactive cells and cells with ambiguous levels of atypia may differ between pathologists. Considerable research is happening towards the automation of fluid cytology reporting. We propose an integrated approach based on deep learning, where the network learns directly to detect the malignant cells in effusion cytology images. Architecture U-Net is used to learn the malignant and benign cells from the images and to detect the images that contain malignant cells. The model gives a precision of 0.96, recall of 0.96, and specificity of 0.97. The AUC of the ROC curve is 0.97. The model can be used as a screening tool and has a malignant cell detection rate of 0.96 with a low false alarm rate of 0.03. © 2020 IEEE.Item Semantic Segmentation on Low Resolution Cytology Images of Pleural and Peritoneal Effusion(Institute of Electrical and Electronics Engineers Inc., 2022) Aboobacker, S.; Verma, A.; Vijayasenan, D.; Sumam David, S.; Suresh, P.K.; Sreeram, S.Automation in the detection of malignancy in effusion cytology helps to save time and workload for cytopathologists. Cytopathologists typically consider a low-resolution image to identify the malignant regions. The identified regions are scanned at a higher resolution to confirm malignancy by investigating the cell level behaviour. Scanning and processing time can be saved by zooming only the identified malignant regions instead of entire low-resolution images. This work predicts malignancy in cytology images at a very low resolution (4X). Annotation of cytology images at a very low resolution is challenging due to the blurring of features such as nuclei and texture. We address this issue by upsampling the very low-resolution images using adversarial training. This work develops a semantic segmentation model trained on 10X images and reuse the network to utilize the 4X images. The prediction results of low resolution images improved by 15% in average F-score for adversarial based upsampling compared to a bicubic filter. The high resolution model gives a 95% average F-score for high resolution images. Also, the sub-area of the whole slide that requires to be scanned at high magnification is reduced by approximately 61% while using adversarial based upsampling compared to a bicubic filter. © 2022 IEEE.Item Semi-supervised Semantic Segmentation of Effusion Cytology Images Using Adversarial Training(Springer Science and Business Media Deutschland GmbH, 2023) Rajpurohit, M.; Aboobacker, S.; Vijayasenan, D.; Sumam David, S.; Suresh, P.K.; Sreeram, S.In pleural effusion, an excessive amount of fluid gets accumulated inside the pleural cavity along with signs of inflammation, infections, malignancies, etc. Usually, a manual cytological test is performed to detect and diagnose pleural effusion. The deep learning solutions for effusion cytology include a fully supervised model trained on effusion cytology images with the help of output maps. The low-resolution cytology images are harder to label and require the supervision of an expert, the labeling process time-consuming and expensive. Therefore, we have tried to use some portion of data without any labels for training our models using the proposed semi-supervised training methodology. In this paper, we proposed an adversarial network-based semi-supervised image segmentation approach to automate effusion cytology. The semi-supervised methodology with U-Net as the generator shows nearly 12% of absolute improvement in the f-score of benign class, 8% improvement in the f-score of malignant class, and 5% improvement in mIoU score as compared to a fully supervised U-Net model. With ResUNet++ as a generator, a similar improvement in the f-score of 1% for benign class, 8% for the malignant class, and 1% in the mIoU score is observed as compared to a fully supervised ResUNet++ model. © 2023, The Author(s), under exclusive license to Springer Nature Singapore Pte Ltd.Item Semi-supervised Semantic Segmentation for Effusion Cytology Images(Springer Science and Business Media Deutschland GmbH, 2023) Aboobacker, S.; Vijayasenan, D.; Sumam David, S.; Suresh, P.K.; Sreeram, S.Cytopathologists analyse images captured at different magnifications to detect the malignancies in effusions. They identify the malignant cell clusters from the lower magnification, and the identified area is zoomed in to study cell level details in high magnification. The automatic segmentation of low magnification images saves scanning time and storage requirements. This work predicts the malignancy in the effusion cytology images at low magnification levels such as 10 × and 4 ×. However, the biggest challenge is the difficulty in annotating the low magnification images, especially the 4 × data. We extend a semi-supervised learning (SSL) semantic model to train unlabelled 4 × data with the labelled 10 × data. The benign F-score on the predictions of 4 × data using the SSL model is improved 15% compared with the predictions of 4 × data on the semantic 10 × model. © 2023, The Author(s), under exclusive license to Springer Nature Singapore Pte Ltd.