Faculty Publications
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Item Modified Dual Domain Network for SAR Change Detection(Institute of Electrical and Electronics Engineers Inc., 2024) Kevala, V.D.; Ravi, S.; Surya Kaushik, B.N.; Lal, S.Synthetic Aperture Radar (SAR) images are utilised for change detection analysis due to their all-weather imaging capabilities. This paper proposes modified dual domain network (MDDNet) for SAR change detection. We introduced the atrous spatial pyramid pooling block to extract multiscale characteristics in the spatial domain. The MDDNet extracts features from both the spatial and frequency domains. The proposed network is trained unsupervised with pre-classification output. The performances of proposed and existing SAR change detection models are evaluated on four bitemporal SAR datasets. The experimental results indicate that the results of proposed MDDNet is better than existing change detection models on four bitemporal SAR dataset. © 2024 IEEE.Item NucleiSegNet: Robust deep learning architecture for the nuclei segmentation of liver cancer histopathology images(Elsevier Ltd, 2021) Lal, S.; Das, D.; Alabhya, K.; Kanfade, A.; Kumar, A.; Kini, J.R.The nuclei segmentation of hematoxylin and eosin (H&E) stained histopathology images is an important prerequisite in designing a computer-aided diagnostics (CAD) system for cancer diagnosis and prognosis. Automated nuclei segmentation methods enable the qualitative and quantitative analysis of tens of thousands of nuclei within H&E stained histopathology images. However, a major challenge during nuclei segmentation is the segmentation of variable sized, touching nuclei. To address this challenge, we present NucleiSegNet - a robust deep learning network architecture for the nuclei segmentation of H&E stained liver cancer histopathology images. Our proposed architecture includes three blocks: a robust residual block, a bottleneck block, and an attention decoder block. The robust residual block is a newly proposed block for the efficient extraction of high-level semantic maps. The attention decoder block uses a new attention mechanism for efficient object localization, and it improves the proposed architecture's performance by reducing false positives. When applied to nuclei segmentation tasks, the proposed deep-learning architecture yielded superior results compared to state-of-the-art nuclei segmentation methods. We applied our proposed deep learning architecture for nuclei segmentation to a set of H&E stained histopathology images from two datasets, and our comprehensive results show that our proposed architecture outperforms state-of-the-art methods. As part of this work, we also introduced a new liver dataset (KMC liver dataset) of H&E stained liver cancer histopathology image tiles, containing 80 images with annotated nuclei procured from Kasturba Medical College (KMC), Mangalore, Manipal Academy of Higher Education (MAHE), Manipal, Karnataka, India. The proposed model's source code is available at https://github.com/shyamfec/NucleiSegNet. © 2020 Elsevier LtdItem Efficient and robust deep learning architecture for segmentation of kidney and breast histopathology images(Elsevier Ltd, 2021) Chanchal, A.K.; Kumar, A.; Lal, S.; Kini, J.Image segmentation is consistently an important task for computer vision and the analysis of medical images. The analysis and diagnosis of histopathology images by using efficient algorithms that separate hematoxylin and eosin-stained nuclei was the purpose of our proposed method. In this paper, we propose a deep learning model that automatically segments the complex nuclei present in histology images by implementing an effective encoder–decoder architecture with a separable convolution pyramid pooling network (SCPP-Net). The SCPP unit focuses on two aspects: first, it increases the receptive field by varying four different dilation rates, keeping the kernel size fixed, and second, it reduces the trainable parameter by using depth-wise separable convolution. Our deep learning model experimented with three publicly available histopathology image datasets. The proposed SCPP-Net provides better experimental segmentation results compared to other existing deep learning models and is evaluated in terms of F1-score and aggregated Jaccard index. © 2021 Elsevier LtdItem Deep learning ensemble method for classification of satellite hyperspectral images(Elsevier B.V., 2021) Iyer, P.; A, S.; Lal, S.Classification of hyperspectral image(HSI) is extensively utilized for the study of remotely sensed satellite images for various real-life applications. Convolutional Neural Networks (CNNs) are a commonly used deep learning technique for image data processing. The utilization of 2D CNNs and 3D CNNs have gained popularity in recent years for classification of hyperspectral image, and a lot of architectures with the combination of two have been proposed some of which include residual network based architectures. So, far individual models have been proposed and ensembling has not been explored much. In this paper, we propose an inception inspired architecture (IIA) and ensembled it with existing architectures HybridSN and inception residual network. The proposed IIA has 3D and 2D inception blocks which enable better spectral-spatial learning features. The Experiments are conducted on three well known publicly available HSI datasets and the results are compared to the state-of-the-art techniques. Experimental results yield that proposed deep learning ensemble method provides enhanced performance as compared to the state-of-the-art techniques. The python source code of the proposed method is available at https://github.com/shyamfec/DL-Ensemble-Method. © 2021 Elsevier B.V.Item Efficient deep learning architecture with dimension-wise pyramid pooling for nuclei segmentation of histopathology images(Elsevier Ltd, 2021) Aatresh, A.A.; Yatgiri, R.P.; Chanchal, A.K.; Kumar, A.; Ravi, A.; Das, D.; Raghavendra, B.S.; Lal, S.; Kini, J.Image segmentation remains to be one of the most vital tasks in the area of computer vision and more so in the case of medical image processing. Image segmentation quality is the main metric that is often considered with memory and computation efficiency overlooked, limiting the use of power hungry models for practical use. In this paper, we propose a novel framework (Kidney-SegNet) that combines the effectiveness of an attention based encoder-decoder architecture with atrous spatial pyramid pooling with highly efficient dimension-wise convolutions. The segmentation results of the proposed Kidney-SegNet architecture have been shown to outperform existing state-of-the-art deep learning methods by evaluating them on two publicly available kidney and TNBC breast H&E stained histopathology image datasets. Further, our simulation experiments also reveal that the computational complexity and memory requirement of our proposed architecture is very efficient compared to existing deep learning state-of-the-art methods for the task of nuclei segmentation of H&E stained histopathology images. The source code of our implementation will be available at https://github.com/Aaatresh/Kidney-SegNet. © 2021 Elsevier LtdItem UCDNet: A Deep Learning Model for Urban Change Detection From Bi-Temporal Multispectral Sentinel-2 Satellite Images(Institute of Electrical and Electronics Engineers Inc., 2022) Basavaraju, K.S.; Sravya, N.; Lal, S.; Nalini, J.; Chintala, C.S.; Dell’Acqua, F.Change detection (CD) from satellite images has become an inevitable process in earth observation. Methods for detecting changes in multi-temporal satellite images are very useful tools when characterization and monitoring of urban growth patterns is concerned. Increasing worldwide availability of multispectral images with a high revisit frequency opened up more possibilities in the study of urban CD. Even though there exists several deep learning methods for CD, most of these available methods fail to predict the edges and preserve the shape of the changed area from multispectral images. This article introduces a deep learning model called urban CD network (UCDNet) for urban CD from bi-temporal multispectral Sentinel-2 satellite images. The model is based on an encoder-decoder architecture which uses modified residual connections and the new spatial pyramid pooling (NSPP) block, giving better predictions while preserving the shape of changed areas. The modified residual connections help locate the changes correctly, and the NSPP block can extract multiscale features and will give awareness about global context. UCDNet uses a proposed loss function which is a combination of weighted class categorical cross-entropy (WCCE) and modified Kappa loss. The Onera Satellite Change Detection (OSCD) dataset is used to train, evaluate, and compare the proposed model with the benchmark models. UCDNet gives better results from the reference models used here for comparison. It gives an accuracy of 99.3%, an $F1$ score ( $F1$ ) of 89.21%, a Kappa coefficient (Ka) of 88.85%, and a Jaccard index (JI) of 80.53% on the OSCD dataset. © 1980-2012 IEEE.Item Deep structured residual encoder-decoder network with a novel loss function for nuclei segmentation of kidney and breast histopathology images(Springer, 2022) Chanchal, A.K.; Lal, S.; Kini, J.To improve the process of diagnosis and treatment of cancer disease, automatic segmentation of haematoxylin and eosin (H & E) stained cell nuclei from histopathology images is the first step in digital pathology. The proposed deep structured residual encoder-decoder network (DSREDN) focuses on two aspects: first, it effectively utilized residual connections throughout the network and provides a wide and deep encoder-decoder path, which results to capture relevant context and more localized features. Second, vanished boundary of detected nuclei is addressed by proposing an efficient loss function that better train our proposed model and reduces the false prediction which is undesirable especially in healthcare applications. The proposed architecture experimented on three different publicly available H&E stained histopathological datasets namely: (I) Kidney (RCC) (II) Triple Negative Breast Cancer (TNBC) (III) MoNuSeg-2018. We have considered F1-score, Aggregated Jaccard Index (AJI), the total number of parameters, and FLOPs (Floating point operations), which are mostly preferred performance measure metrics for comparison of nuclei segmentation. The evaluated score of nuclei segmentation indicated that the proposed architecture achieved a considerable margin over five state-of-the-art deep learning models on three different histopathology datasets. Visual segmentation results show that the proposed DSREDN model accurately segment the nuclear regions than those of the state-of-the-art methods. © 2022, The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.Item DIResUNet: Architecture for multiclass semantic segmentation of high resolution remote sensing imagery data(Springer, 2022) Priyanka; Sravya, N.; Lal, S.; Nalini, J.; Chintala, C.S.; Dell’Acqua, F.Scene understanding is an important task in information extraction from high-resolution aerial images, an operation which is often involved in remote sensing applications. Recently, semantic segmentation using deep learning has become an important method to achieve state-of-the-art performance in pixel-level classification of objects. This latter is still a challenging task due to large pixel variance within classes possibly coupled with small pixel variance between classes. This paper proposes an artificial-intelligence (AI)-based approach to this problem, by designing the DIResUNet deep learning model. The model is built by integrating the inception module, a modified residual block, and a dense global spatial pyramid pooling (DGSPP) module, in combination with the well-known U-Net scheme. The modified residual blocks and the inception module extract multi-level features, whereas DGSPP extracts contextual intelligence. In this way, both local and global information about the scene are extracted in parallel using dedicated processing structures, resulting in a more effective overall approach. The performance of the proposed DIResUNet model is evaluated on the Landcover and WHDLD high resolution remote sensing (HRRS) datasets. We compared DIResUNet performance with recent benchmark models such as U-Net, UNet++, Attention UNet, FPN, UNet+SPP, and DGRNet to prove the effectiveness of our proposed model. Results show that the proposed DIResUNet model outperforms benchmark models on two HRRS datasets. © 2022, The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.Item A new deep learning architecture for dehazing of aerial remote sensing images(Springer, 2022) Kalra, A.; Sequeira, A.; Manjunath, A.; Lal, S.; Raghavendra, R.A major problem in most aerial remote image processing applications is the presence of haze in images. It is a phenomenon by which particles in the atmosphere disperse light, thus altering the quality of the overall image. This can be detrimental to the performance of vision-based algorithms such as those concerned with object detection. There have been numerous attempts using traditional image processing techniques as well as using deep learning approaches to eliminate this haze. In most cases, models tend to make assumptions on the nature of haze that are rarely true in reality. In this paper, we propose an end-to-end deep learning architecture that can dehaze aerial remote sensing images efficiently with minimal deviation from the ground truth. Many of the assumptions made in other models are eliminated and the relationship between hazed and dehazed images is directly computed. The proposed model is based on the observation that identifying structural and statistical portions separately from an image and using those features to reconstruct the image can give a realistic dehazed image. It also makes use of information exposed by different color spaces to achieve this using lesser computation. The experimental quantitative and qualitative results of the proposed architecture are compared with recent benchmark dehaze models on NYU hazy dataset and real-world hazy images. Experimental results yield that the proposed architecture outperforms benchmark models on test aerial remote sensing images. © 2022, The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.Item Novel edge detection method for nuclei segmentation of liver cancer histopathology images(Springer Science and Business Media Deutschland GmbH, 2023) Roy, S.; Das, D.; Lal, S.; Kini, J.In automatic cancer detection, nuclei segmentation is a very essential step which enables the classification task simpler and computationally more efficient. However, automatic nuclei detection is fraught with the problems of inter-class variability of nuclei size and shapes. In this research article, a novel unsupervised edge detection technique, is proposed for segmenting the nuclei regions in liver cancer Hematoxylin and Eosin (H&E) stained histopathology images. In this novel edge detection technique, the notion of computing local standard deviation is incorporated, instead of computing gradients. Since, local standard deviation value is correlated with the edge information of image, this novel method can extract the nuclei edges efficiently, even at multiscale. The edge-detected image is further converted into a binary image by employing Ostu (IEEE Trans Syst Man Cybern 9(1):62–66, 1979)’s thresholding operation. Subsequently, an adaptive morphological filter is also employed in order to refine the final segmented image. The proposed nuclei segmentation method is also tested on a well-recognized multi-organ dataset, in order to check its effectiveness over wide variety of dataset. The visual results of both datasets indicate that the proposed segmentation method overcomes the limitations of existing unsupervised methods, moreover, its performance is comparable with the same of recent deep neural models like DIST, HoverNet, etc. Furthermore, three quality metrics are computed in order to measure the performance of several nuclei segmentation methods quantitatively. The mean value of quality metrics reveals that proposed segmentation method indeed outperformed other existing nuclei segmentation methods. © 2021, The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.
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