Hardware Acceleration of Optically Labeled Human Genome Sequencing using a Novel Algorithm
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Date
2018
Journal Title
Journal ISSN
Volume Title
Publisher
Institute of Electrical and Electronics Engineers Inc.
Abstract
Recently, reconstruction of the entire DNA sequence from optically labeled genomes has been explored. In this paper, we present details of a novel algorithm for this genome assembly. We elucidate the design methodology and results for a multi-core CPU (1.98x speedup) and FPGA (7.022x speedup) implementation to accelerate the computations. © 2018 IEEE.
Description
Keywords
Acceleration, FPGA, Genome assembly, Multi-core CPU, Parallel algorithm
Citation
2018 IEEE International Conference on Electronics, Computing and Communication Technologies, CONECCT 2018, 2018, Vol., , p. -