Comprehensive analysis of Syzygium cumini L. pomace extract as an ?-amylase inhibitor: In vitro inhibition, kinetics, and computational studies

dc.contributor.authorVenkatramanan, V.
dc.contributor.authorBalu, A.K.
dc.contributor.authorSinclair, B.J.
dc.contributor.authorPerinbarajan, G.K.
dc.contributor.authorJenifer A, D.
dc.contributor.authorGanesan Sudha, H.
dc.contributor.authorArulvel, A.
dc.contributor.authorBaskar, B.
dc.contributor.authorMuthu, M.
dc.date.accessioned2026-02-03T13:19:46Z
dc.date.issued2025
dc.description.abstractType 2 diabetes mellitus (T2DM) is a widespread metabolic disorder characterized by impaired regulation of blood glucose levels. Jamun (Syzygium cumini L.) fruits and seeds have been traditionally used in Ayurveda to manage diabetes. While fruit and seed extracts have been extensively studied for their anti-?-amylase properties, pomace, a byproduct of juice extraction, remains under explored. This study investigated the ?-amylase inhibitory potential of jamun pomace (JP) extract by using in vitro and in silico methods. Enzyme inhibition assays revealed an half-maximal inhibitory concentration (IC??) value of 85.68 ± 5.22 ?g/mL for the JP extract, comparable to acarbose (64.28 ± 7.15 ?g/mL). The extract exhibited mixed-mode inhibition, whereas acarbose showed competitive mode inhibition. At 10 ?g/mL, the V<inf>max</inf> of JP extract was half that of acarbose, demonstrating significant inhibition. GC–MS analysis identified 11 volatile compounds (R1–R11) in the JP extract. Density Functional Theory (DFT) and ADMET analyses confirmed the chemical reactivity of the volatiles, drug-like properties, and low toxicity. Molecular docking revealed a high binding score for R11 (?8.0 kcal/mol), similar to acarbose (?8.2 kcal/mol). Molecular dynamics simulations further demonstrated the stability of ?-amylase complexes with R11, R3, and R8, with R11 showing the lowest binding energy (?28.75 ± 6.25 kcal/mol). These findings suggest that R11 and JP extracts hold promise as anti-diabetic agents. Utilizing JP extract as a nutraceutical offers the dual benefit of diabetes management and sustainable waste valorization in jamun juice production. © 2025 Elsevier Inc.
dc.identifier.citationBioorganic Chemistry, 2025, 161, , pp. -
dc.identifier.issn452068
dc.identifier.urihttps://doi.org/10.1016/j.bioorg.2025.108498
dc.identifier.urihttps://idr.nitk.ac.in/handle/123456789/20210
dc.publisherAcademic Press Inc.
dc.subjectacarbose
dc.subjectamylase
dc.subjectamylase inhibitor
dc.subjectSyzygium cumini extract
dc.subjectvolatile agent
dc.subjectantidiabetic agent
dc.subjectglycosidase inhibitor
dc.subjectplant extract
dc.subjectArticle
dc.subjectbinding affinity
dc.subjectcomputer model
dc.subjectcontrolled study
dc.subjectdensity functional theory
dc.subjectdrug absorption
dc.subjectdrug distribution
dc.subjectdrug excretion
dc.subjectdrug metabolism
dc.subjectdrug protein binding
dc.subjectdrug stability
dc.subjectenzyme inhibition
dc.subjectenzyme inhibition assay
dc.subjectenzyme kinetics
dc.subjectfruit waste
dc.subjectIC50
dc.subjectin vitro study
dc.subjectmass fragmentography
dc.subjectmolecular docking
dc.subjectmolecular dynamics
dc.subjectscoring system
dc.subjectsurface analysis
dc.subjectSyzygium cumini
dc.subjectwaste valorization
dc.subjectchemical structure
dc.subjectchemistry
dc.subjectdose response
dc.subjecthuman
dc.subjectisolation and purification
dc.subjectkinetics
dc.subjectmetabolism
dc.subjectstructure activity relation
dc.subjectSyzygium
dc.subjectalpha-Amylases
dc.subjectDensity Functional Theory
dc.subjectDose-Response Relationship, Drug
dc.subjectGlycoside Hydrolase Inhibitors
dc.subjectHumans
dc.subjectHypoglycemic Agents
dc.subjectKinetics
dc.subjectMolecular Docking Simulation
dc.subjectMolecular Structure
dc.subjectPlant Extracts
dc.subjectStructure-Activity Relationship
dc.titleComprehensive analysis of Syzygium cumini L. pomace extract as an ?-amylase inhibitor: In vitro inhibition, kinetics, and computational studies

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