Faculty Publications
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Item Controlled release of nutrients to mammalian cells cultured in shake flasks(2012) Hegde, S.; Pant, T.; Pradhan, K.; Badiger, M.; Gadgil, M.Though cell culture-based protein production processes are rarely carried out under batch mode of operation, cell line and initial process development operations are usually carried out in batch mode due to simplicity of operation in widely used scale down platforms like shake flasks. Nutrient feeding, if performed, is achieved by bolus addition of concentrated feed solution at different intervals, which leads to large transient increases in nutrient concentrations. One negative consequence is increased waste metabolite production. We have developed a hydrogel-based nutrient delivery system for continuous feeding of nutrients in scale down models like shake flasks without the need for manual feed additions or any additional infrastructure. Continuous delivery also enables maintaining nutrient concentrations at low levels, if desired. The authors demonstrate the use of these systems for continuous feeding of glucose and protein hydrolysate to a suspension Chinese Hamster Ovary (CHO) culture in a shake flask. Glucose feeding achieved using the glucose-loaded hydrogel resulted in a 23% higher integral viable cell density and an 89% lower lactate concentration at the end of the culture when compared with a bolus-feed of glucose. © 2011 American Institute of Chemical Engineers (AIChE).Item Optimization and kinetic modeling of cell-associated camptothecin production from an endophytic fusarium oxysporum NFX06(Taylor and Francis Inc. 325 Chestnut St, Suite 800 Philadelphia PA 19106, 2015) Musavi, S.F.; Dhavale, A.; Mohan Balakrishnan, R.M.The production of cell-associated camptothecin (CPT) from an endophytic fungus Fusarium oxysporum NFX06 isolated from Nothapodytes foetida and its kinetics studies were proposed. Response surface methodology (RSM) based on central composite design (CCD) was used to construct a model to describe the effects of substrate concentration. Three independent variables (dextrose, peptone, and MgSO4) were successfully employed to study the yield of CPT under submerged fermentation. The maximum yield of CPT obtained from CCD was about 598.0 ng/g biomass. The model-validated optimum predicted CPT yield and experimental CPT yield from the biomass were found to be 628.08 ng/g and 610.09 ng/g at the concentrations of dextrose 42.64 (g/L), peptone 9.23 (g/L), and MgSO4 0.26 (g/L) respectively. The predicted yield of CPT was 4.90% higher than the value obtained from CCD and 2.85% higher than the value obtained from experiment conducted at optimum conditions. The kinetic parameters, maximum specific growth rate ?max = 1.212 day-1, growth-associated CPT production coefficient (? = 29.35 ng/g biomass), and non-growth-associated CPT production coefficient (? = 0.03 ng CPT/g biomass-day) were obtained. The logistic model was found suitable to predict mycelial growth with a high determination coefficient (R2). Luedeking-Piret and modified Luedeking-Piret models were employed to represent the product kinetics and substrate consumption kinetics. A good concurrence was found between the experimental and predicted values, representing that the unstructured models were able to illustrate the fermentation profile effectively. © 2015 Copyright Taylor & Francis Group, LLC.Item Self-assembly synthesis of Co3O4/multiwalled carbon nanotube composites: An efficient enzyme-free glucose sensor(Royal Society of Chemistry, 2015) Prasad, R.; Badekai Ramachandra, B.R.Self-assembled cobalt oxide-multiwalled carbon nanotube composites were synthesized by simple and effective wet chemical routes. Using these materials, a modified glassy carbon electrode was fabricated and investigated for enzyme-free glucose sensor applications. The fabricated sensor exhibited a high sensitivity of 5089.1 ?A mM-1 cm-2 with a detection limit of 10.42 ?M over a glucose concentration ranging from 0.05 to 12 mM. The sensor also shows promising sensor features like stability, selectivity and fast detection. Moreover, the detection of glucose in human blood serum samples with the as-developed sensor agreed well with the results obtained from commercial glucose meters. © The Royal Society of Chemistry and the Centre National de la Recherche Scientifique.Item Laser assisted zona hatching does not lead to immediate impairment in human embryo quality and metabolism(Taylor and Francis Ltd healthcare.enquiries@informa.com, 2016) Uppangala, S.; D’Souza, F.; Pudakalakatti, S.; Atreya, H.S.; Raval, K.; Kalthur, G.; Adiga, S.K.Laser assisted zona hatching (LAH) is a routinely used therapeutic intervention in assisted reproductive technology for patients with poor prognosis. However, results are not conclusive in demonstrating the benefits of zona hatching in improving the pregnancy rate. Recent observations on LAH induced genetic instability in animal embryos prompted us to look into the effects of laser assisted zona hatching on the human preimplantation embryo quality and metabolic uptake using high resolution nuclear magnetic resonance (NMR) technology. This experimental prospective study included fifty embryos from twenty-five patients undergoing intra cytoplasmic sperm injection. Embryo quality assessment followed by profiling of spent media for the non-invasive evaluation of metabolites was performed using NMR spectroscopy 24 hours after laser treatment and compared with that of non-treated sibling embryos. Both cell number and embryo quality on day 3 of development did not vary significantly between the two groups at 24 hours post laser treatment interval. Time lapse monitoring of the embryos for 24 hours did not reveal blastomere fragmentation adjacent to the point of laser treatment. Similarly, principal component analysis of metabolites did not demonstrate any variation across the groups. These results suggest that laser assisted zona hatching does not affect human preimplantation embryo morphology and metabolism at least until 24 hours post laser assisted zona hatching. However, studies are required to elucidate laser induced metabolic and developmental changes at extended time periods. Abbreviations: AH: assisted hatching; ART: assisted reproductive technology; DNA: deoxy-ribo nucleic acid; LAH: laser assisted hatching; MHz: megahertz; NMR: nuclear magnetic resonance; PCA: principal component analysis; PGD: preimplantation genetic diagnosis; TLM: time lapse monitoring © 2016 Taylor & Francis.Item Accurate lumen diameter measurement in curved vessels in carotid ultrasound: an iterative scale-space and spatial transformation approach(Springer Verlag service@springer.de, 2017) Krishna Kumar, P.; Araki, T.; Rajan, J.; Saba, L.; Lavra, F.; Ikeda, N.; Sharma, A.M.; Shafique, S.; Nicolaïdes, A.; Laird, J.R.; Gupta, A.; Suri, J.S.Monitoring of cerebrovascular diseases via carotid ultrasound has started to become a routine. The measurement of image-based lumen diameter (LD) or inter-adventitial diameter (IAD) is a promising approach for quantification of the degree of stenosis. The manual measurements of LD/IAD are not reliable, subjective and slow. The curvature associated with the vessels along with non-uniformity in the plaque growth poses further challenges. This study uses a novel and generalized approach for automated LD and IAD measurement based on a combination of spatial transformation and scale-space. In this iterative procedure, the scale-space is first used to get the lumen axis which is then used with spatial image transformation paradigm to get a transformed image. The scale-space is then reapplied to retrieve the lumen region and boundary in the transformed framework. Then, inverse transformation is applied to display the results in original image framework. Two hundred and two patients’ left and right common carotid artery (404 carotid images) B-mode ultrasound images were retrospectively analyzed. The validation of our algorithm has done against the two manual expert tracings. The coefficient of correlation between the two manual tracings for LD was 0.98 (p < 0.0001) and 0.99 (p < 0.0001), respectively. The precision of merit between the manual expert tracings and the automated system was 97.7 and 98.7%, respectively. The experimental analysis demonstrated superior performance of the proposed method over conventional approaches. Several statistical tests demonstrated the stability and reliability of the automated system. © 2016, International Federation for Medical and Biological Engineering.Item Aqueous two phase based selective extraction of mannose/glucose specific lectin from Indian cultivar of Pisum sativum seed(Elsevier B.V., 2019) Rashmi, B.S.; Iyyaswami, R.Pisum sativum lectin (Psl) being a high-value protein has marked its application in the biomedical and therapeutic field. Aqueous two phase extraction (ATPE) was implemented as a selective partitioning technique for the partial purification of Psl from its seeds. PEG/citrate based biodegradable aqueous two phase system (ATPS) was screened and the factors such as the type and concentration of citrate salts, molar mass and concentration of polyethylene glycol (PEG), tie line length (TLL) and additive (NaCl) concentration, pH, crude load and volume ratio were studied for the selective partition of Psl. The Psl was successfully extracted to the top phase in the ATPS formed with 18% PEG 6000/16% sodium citrate at 41.01% TLL, 2% NaCl and pH of 7.5. A volume ratio of 0.76 and a crude load of 20% showed maximum activity yield of 122.12% with the purification factor of 16.26. The subunits of Psl namely ? and ? were identified with a molecular weight of 6 and 18 kDa respectively during the purity analysis using SDS PAGE and HPLC. © 2019 Elsevier B.V.Item Aggregative ways of graphene quantum dots with nitrogen-rich edges for direct emission spectrophotometric estimation of glucose(Elsevier B.V., 2019) Mishra, P.; Badekai Ramachandra, B.R.We report a facile one step in-situ synthesis of amino-functionalized graphene dots. These quantum dots were employed for the detection of glucose in both standard aqueous solutions and commercially available fruit juice to assess its practicability. The characterization of the quantum dots revealed that they were decorated with amine functionality. Additionally, the interaction between glucose and amine functionalized graphene quantum dots gave enhancement in the UV–vis absorption and photoluminescence (PL) due to aggregation of quantum dots via glucose link. Therefore, the quantum dots were able to detect the concentration of glucose in solution exhibiting linearity from 0.1 to 10 mM and 50–500 mM with a sensitivity transition from 10 mM to 50 mM. The limit of detection for the determination of glucose was found to be 10 ?M. This determination was agreed from both UV–Vis absorption and PL spectroscopy. However, the PL emission method of determination was most suited with its very high accuracy of 98.04 ± 1.96% and 97.33 ± 2.67% for the linear range of glucose concentration within 0.1–10 mM and 50–500 mM, respectively. The PL enhancement was highly selective towards glucose in mixture of other form of sugars making it suitable for determining glucose in food samples. © 2019Item Novel strategies for glucose production from biomass using heteropoly acid catalyst(Elsevier Ltd, 2020) Nayak, A.; Pulidindi, I.N.; Sankar Rao, C.S.Bioethanol and direct glucose fuel cells pledged clean energy to the world. Cellulose depolymerization for glucose production has been a successful approach in bioethanol production. Heteropoly acids (HPAs) are strong Brønsted solid acid catalysts for biomass hydrolysis. Keggin type HPAs, namely, Silicotungstic acid (HSiW), Phosphotungstic acid (HPW), and Phosphomolybdic acid (HPMo), were used for the hydrolysis of lignocellulosic biomass to glucose. Five different biomass feedstocks, namely, miscanthus, sugarcane leaves, switchgrass, sunflower seeds, and bamboo leaves, were examined for the feasibility of total reducing sugar (TRS) yield through the composition analysis and catalytic biomass hydrolysis. Sunflower seeds contained the maximum holocellulose with 90.6%, and switchgrass contained the least i.e., 77.63%. Among the five biomass tested, switchgrass resulted in the highest TRS (5.77 wt/dry wt. %) with HPMo catalyst at a catalyst to biomass ratio of 30:100 (wt./wt. %), a reaction temperature of 120 °C for 3 h. The reaction parameters for depolymerization were optimized for all three HPAs, and the optimized conditions were 3 h and 120 °C. HPMo showed maximum TRS yield (5.77 wt/dry wt.%) among the three HPAs at 30:100 catalyst to biomass ratio. However, a catalyst to biomass ratio of 20:100 (wt./wt.%) was economical (5.25 wt/dry wt.%) for commercial application. © 2020 Elsevier LtdItem Hydrochloric acid-catalyzed coproduction of furfural and 5-(chloromethyl)furfural assisted by a phase transfer catalyst(Elsevier Ltd, 2020) Bhat, N.S.; Vinod, N.; Onkarappa, S.B.; Dutta, S.Furfural has been produced in 53% isolated yield from D-xylose within an aqueous HCl-1,2-dichloroethane biphasic reaction mixture using benzyltributylammonium chloride (BTBAC) as a phase transfer catalyst. The use of BTBAC noticeably improved the yield of furfural compared to that in the control reaction. The reaction was optimized on the reaction temperature, duration, concentration of HCl, and the loading of BTBAC. Furfural and 5-(chloromethyl)furfural (CMF) have also been coproduced from a mixture of pentose and hexose sugars. Under optimized conditions (100 °C, 3 h, 20.2% HCl, 10 wt% BTBAC), CMF and furfural were isolated in 17% and 53% yield, respectively, from a mixture of glucose and xylose. In addition, levulinic acid was isolated from the aqueous layer in 31% yield. © 2020 Elsevier LtdItem Duration of dry and humidified incubation of single-step embryo culture medium and oxygen tension during sham culture do not alter medium composition.(F1000 Research Ltd, 2022) Adiga, S.K.; Cheredath, A.; Uppangala, S.; Asampille, G.; Lakshmi, V.; Joseph, D.; Raval, K.; Gowda, N.; Kalthur, G.Background: The extended embryo culture using single-step medium gained popularity in clinical in vitro fertilisation (IVF). However, there are concerns about the degradation of unstable medium components and their negative effects on the developing embryos. Further, dry-incubation can increase osmolality, which can in-turn enhance the concentration of constituents of the media and their stability. Hence, this study was conducted to understand the immediate changes in the culture media constituents in relation to clinically comparable situations such as single-step extended embryo culture and use of dry and humidified-incubation in two-different gaseous conditions. Methods: Commercially available single-step medium was sham-cultured in droplets under oil in two different conditions viz. dry (37°C; 6%CO 2; 5%O 2) and humidified (37°C; 6% CO 2; atmospheric O 2) for 0h, 72h, and 120h intervals. Droplets were subjected to the sensitivity-enhanced nuclear magnetic resonance (NMR)-based profiling using 800 MHz NMR equipped with a cryogenically cooled micro-coil (1.7mm) probe. NMR profile of the embryo culture medium between the two groups were comprehensively assessed. Results: A total of ten amino acids and four energy substrates were identified from the culture medium. The medium constituents identified showed a non-significant increase in the dry-incubation group at 72h and then declined at 120h. Humidified incubation had no effects on the level of the identified medium constituents until 120h. No significant differences in the levels of medium constituents identified were observed between the dry and humidified-groups at various time-points tested. Conclusions: A non-significant variation in the levels of medium constituents observed in the dry-incubation of single-step medium most unlikely to influence a clinical outcome. However, the impact of these subtle changes on the (epi)genetic integrity of the embryos in a clinical set-up to be addressed. © 2022 Cheredath A et al.