Faculty Publications
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Item Artificial neural networks model for the prediction of steady state phenol biodegradation in a pulsed plate bioreactor(2008) Shetty K, K.V.; Nandennavar, S.; Srinikethan, G.Background: A recent innovation in fixed film bioreactors is the pulsed plate bioreactor (PPBR) with immobilized cells. The successful development of a theoretical model for this reactor relies on the knowledge of several parameters, which may vary with the process conditions. It may also be a time-consuming and costly task because of their nonlinear nature. Artificial neural networks (ANN) offer the potential of a generic approach to the modeling of nonlinear systems. Results: A feedforward ANN based model for the prediction of steady state percentage degradation of phenol in a PPBR by immobilized cells of Nocardia hydrocarbonoxydans (NCIM 2386) during continuous biodegradation has been developed to correlate the steady state percentage degradation with the flow rate, influent phenol concentration and vibrational velocity (amplitude x frequency). The model used two hidden layers and 53 parameters (weights and biases). The network model was then compared with a Multiple Regression Analysis (MRA) model, derived from the same training data. Further these two models were used to predict the percentage degradation of phenol for blind test data. Conclusions: The performance of the ANN model was superior to that of the MRA model and was found to be an efficient data-driven tool to predict the performance of a PPBR for phenol biodegradation. © 2008 Society of Chemical Industry.Item Modelling and simulation of steady-state phenol degradation in a pulsed plate bioreactor with immobilised cells of Nocardia hydrocarbonoxydans(2011) Shetty K, V.S.; Verma, D.K.; Srinikethan, G.A novel bioreactor called pulsed plate bioreactor (PPBR) with cell immobilised glass particles in the interplate spaces was used for continuous aerobic biodegradation of phenol present in wastewater. A mathematical model consisting of mass balance equations and accounting for simultaneous external film mass transfer, internal diffusion and reaction is presented to describe the steady-state degradation of phenol by Nocardia hydrocarbonoxydans (Nch.) in this bioreactor. The growth of Nch. on phenol was found to follow Haldane substrate inhibition model. The biokinetic parameters at a temperature of 30 ± 1 °C and pH at 7.0 ± 0.1 are ? m = 0.5397 h -1, K S = 6.445 mg/L and K I = 855.7 mg/L. The mathematical model was able to predict the reactor performance, with a maximum error of 2% between the predicted and experimental percentage degradations of phenol. The biofilm internal diffusion rate was found to be the slowest step in biodegradation of phenol in a PPBR. © 2010 Springer-Verlag.Item Production of propyl gallate in nonaqueous medium using cell-associated tannase of Bacillus massiliensis: Effect of various parameters and statistical optimization(2013) Aithal, M.; Belur, P.D.Enzymatic synthesis of propyl gallate in an organic solvent was studied using cell-associated tannase (E.C. 3.1.1.20) of Bacillus massiliensis. Lyophilized biomass showing tannase activity was used as a biocatalyst. The influence of buffer pH and strength, water activity, temperature, biocatalyst loading, gallic acid concentration, and 1-propanol concentration was studied by the one-factor-at-a-time method. Subsequently, response surface methodology was applied based on a central composite design to determine the effects of three independent variables (biocatalyst loading, gallic acid concentration, and 1-propanol concentration) and their mutual interactions. A total of 20 experiments were conducted, and a statistical model was developed, which predicted the maximum propyl gallate yield of 20.28 ?g/mL in the reaction mixture comprising 40.4 mg biocatalyst, 0.4 mM gallic acid, and 6.52 % (v/v) 1-propanol in 9.5 mL benzene at 30°C. The subsequent verification experiments established the validity of the model. Under optimal conditions, 25% conversion of gallic acid to propyl gallate was achieved on a molar basis. The absence of the need for enzyme purification and subsequent immobilization steps and good conversion efficiency makes this enzyme system an interesting one. Reports on the applications of bacterial whole cell systems for synthetic reactions in organic solvents are scarce, and perhaps this is the first report on bacterial cell-associated tannase-mediated esterification in a nonaqueous medium. © 2013 International Union of Biochemistry and Molecular Biology, Inc.Item Expression of Bacillus licheniformis chitin deacetylase in E. coli pLysS: Sustainable production, purification and characterisation(Elsevier B.V., 2019) Bhat, P.; Pawaskar, G.-M.; Raval, R.; Cord-Landwehr, S.; Moerschbacher, B.; Raval, K.Chitosan obtained by enzymatic deacetylation of chitin using chitin deacetylase (CDA) holds promise primarily due to the possibility to yield chitosan with non-random patterns of acetylation and more environmentally friendly process compared to chemical deacetylation. In the present study, a sustainable bioprocess is reported for over-expression of a bacterial CDA in E. coli pLysS cells. A Bacillus licheniformis CDA gene is identified in the genome of the bacterium, cloned, and expressed, yielding enzymatically active recombinant protein. For enzyme production, a growth medium is formulated using carbon and nitrogen sources, which do not compete with the human food chain. The maximum enzyme activity of 320 ± 20 U/mL is achieved under optimized conditions. The CDA productivity is improved by about 23 times in shake flask culture by optimizing operating conditions and medium components. The CDA is purified and the enzyme kinetic values i.e. Km, Vmax and Kcat are reported. Also the effect of cofactors, temperature, and pH on the enzyme activity is reported. Further, economic yield is proposed for production of CDA through this bioprocess. © 2019 Elsevier B.V.Item Calorespirometric investigation of Streptococcus zooepidemicus metabolism: Thermodynamics of anabolic payload contribution by growth and hyaluronic acid synthesis(Elsevier B.V., 2019) Mohan, N.; Allampalli, S.S.; Achar, A.; Swaminathan, N.; Sivaprakasam, S.Thermodynamic analysis of carbon flux competing for pathways of S. zooepidemicus in the production of catabolic (Lactic acid) and anabolic (Biomass and Hyaluronic Acid) products is investigated to assimilate the thermodynamic advantages of biopolymer production. Calorespirometry was employed to fingerprint the on-going HA production process and to predict reliable estimation of catabolic and anabolic product yields. This study accomplished the HA production at different initial glucose concentrations, S0 (10–60 g/L) to subject different levels of anabolic burden on S. zooepidemicus. Anabolic payload comprising Biomass and HA yields showed a concomitant decrease with respect to the increased concentration of S0. Chemical entropy exported over the cell surface in the form of LA production exhibited an increasing trend at different levels of glucose, thus reducing the total yields of biomass and HA. Thermodynamically anabolic load contributed by biomass and HA production found to have minor influence over the driving force of S. zooepidemicus metabolism due to their lower yields. The entropy contribution to the overall driving force is significant (T?SX= [Formula presented] ?rGX) at the higher biomass yields. This study allows the prediction of optimum biomass yield towards enhanced HA production and addresses the scope of ‘thermodynamic constraints’ application in real-time process monitoring and control using data reconciliation strategy in the near future. © 2019 Elsevier B.V.Item Novel application of maghemite nanoparticles coated bacteria for the removal of cadmium from aqueous solution(Academic Press, 2020) Devatha, C.P.; S, S.Heavy metals are classified as persistent pollutants owing to their nature of bioaccumulation and affect human life and environment, even in minor concentrations. Divalent Cadmium (Cd2+) is one of the heavy metal pollutants that are highly toxic. The present study investigates the novel application of maghemite nanoparticles coated Bacillus subtilis for the removal of Cd2+ ions from its aqueous solution by batch adsorption studies. Surface characterization of the biosorbent done by Scanning Electron Microscope (SEM) and the presence of maghemite nanoparticle coat was confirmed. Parameters like pH, initial metal ion concentration, contact time, and temperature that affect the biosorption of cadmium ions are analyzed, and the equilibrium adsorption capacity expressed as a function of each of the parameters. The mechanism of biosorption was studied by plotting adsorption isotherms, and it follows pseudo-second-order kinetics. Thermodynamic studies showed the process to be spontaneous and endothermic. At optimum conditions of pH 4, 30 °C, 120 rpm, maximum removal percentage of 83.5%, which accounts for an equilibrium adsorption capacity of 32.6 mg/g of biosorbent. There was a recovery of 76.4% of the biosorbent after adsorption studies. Based on the adsorptive capacity and good recovery of the biosorbent, maghemite coated Bacillus subtilis proves to be an efficient adsorbent for the removal of Cd2+ ions from its aqueous solution. © 2019 Elsevier LtdItem Developing a biocatalyst showcasing the synergistic effect of rice husk biochar and bacterial cells for the removal of heavy metals(Royal Society of Chemistry, 2023) Manikandan, S.K.; Nair, V.Heavy metals like cadmium (Cd) and nickel (Ni) are toxic pollutants that affect the environment and pose health risks. Removal of Cd and Ni through bioremediation in the presence of biochar is a sustainable strategy. This study investigated the removal of Cd and Ni by Pseudomonas stutzeri immobilized on rice husk biochar (PRHB). The removal efficiency was calculated by varying the culture incubation time, pH, temperature, biocatalyst dosage, and initial metal ion concentration. PRHB showed a maximum metal removal capacity of 95% Cd and 92% Ni. The removal efficiency of PRHB was higher than that of free cells, which could be attributed to simultaneous adsorption, ion exchange, complexation, precipitation, and bioaccumulation caused by the biochar carrier and bacteria. The rice husk biochar material served as both an adsorbent and a carrier supplying nutrients for the growth of the bacteria. Considering the excellent metal ion removal capability and reusability, the use of PRHB could be a promising, cost-effective, and environment-friendly strategy for treating wastewater containing heavy metals. © 2023 The Royal Society of Chemistry.Item Identification and characterization of chitinase producing marine microorganism: Unleashing the potential of chitooligosaccharides for bioethanol synthesis(Elsevier B.V., 2024) Atheena, P.V.; Rajesh, K.M.; Raval, K.; Subbalaxmi, S.; Raval, R.The dwindling supply of the petroleum product and its carbon footprint has initiated search for a sustainable fuel and alternate feed-stocks. One such underexplored feedstock is chitin, a waste derived from sea food processing. The limitation of insolubility and crystallinity inherent in chitin is addressed with the chitin hydrolysates. In the present study, a chitinases producing marine isolate was isolated from the sediments of Arabian Sea from a depth of 20 m. In order to increase the expression of the chitinases, sequential optimisation using one factor at a time and Taguchi experimental designs were employed which resulted in a yield of 13.46 U/mL which was 2.62 fold higher than the initial bioprocess condition values. In a two-step refinery protocol, Candida albicans was evolved towards chitooligosaccharides using chemically synthesized hydrolysates. In a fed –batch fermentation design the Candida yielded a 12.8 % conversion of these commercial chitin oligosaccharides into bioethanol in a run time of 48 h. This is the first report demonstrating the potential of Candida to utilise chitin oligosaccharides for the production of bioethanol. © 2024 The Author(s)