Faculty Publications

Now showing 1 - 3 of 3

A visual attention guided unsupervised feature learning for robust vessel delineation in retinal images
(Elsevier Ltd, 2018) Srinidhi, C.L.; Aparna., P.; Rajan, J.
Background and objective: Accurate segmentation of retinal vessels from color fundus images play a significant role in early diagnosis of various ocular, systemic and neuro-degenerative diseases. Segmenting retinal vessels is challenging due to varying nature of vessel caliber, the proximal presence of pathological lesions, strong central vessel reflex and relatively low contrast images. Most existing methods mainly rely on carefully designed hand-crafted features to model the local geometrical appearance of vasculature structures, which often lacks the discriminative capability in segmenting vessels from a noisy and cluttered background. Methods: We propose a novel visual attention guided unsupervised feature learning (VA-UFL) approach to automatically learn the most discriminative features for segmenting vessels in retinal images. Our VA-UFL approach captures both the knowledge of visual attention mechanism and multi-scale contextual information to selectively visualize the most relevant part of the structure in a given local patch. This allows us to encode a rich hierarchical information into unsupervised filtering learning to generate a set of most discriminative features that aid in the accurate segmentation of vessels, even in the presence of cluttered background. Results: Our proposed method is validated on the five publicly available retinal datasets: DRIVE, STARE, CHASE_DB1, IOSTAR and RC-SLO. The experimental results show that the proposed approach significantly outperformed the state-of-the-art methods in terms of sensitivity, accuracy and area under the receiver operating characteristic curve across all five datasets. Specifically, the method achieved an average sensitivity greater than 0.82, which is 7% higher compared to all existing approaches validated on DRIVE, CHASE_DB1, IOSTAR and RC-SLO datasets, and outperformed even second-human observer. The method is shown to be robust to segmentation of thin vessels, strong central vessel reflex, complex crossover structures and fares well on abnormal cases. Conclusions: The discriminative features learned via visual attention mechanism is superior to hand-crafted features, and it is easily adaptable to various kind of datasets where generous training images are often scarce. Hence, our approach can be easily integrated into large-scale retinal screening programs where the expensive labelled annotation is often unavailable. © 2018 Elsevier Ltd
Segmentation of intra-retinal cysts from optical coherence tomography images using a fully convolutional neural network model
(Institute of Electrical and Electronics Engineers Inc., 2019) Girish, G.N.; Thakur, B.; Chowdhury, S.R.; Kothari, A.R.; Rajan, J.
Optical coherence tomography (OCT) is an imaging modality that is used extensively for ophthalmic diagnosis, near-histological visualization, and quantification of retinal abnormalities such as cysts, exudates, retinal layer disorganization, etc. Intra-retinal cysts (IRCs) occur in several macular disorders such as, diabetic macular edema, retinal vascular disorders, age-related macular degeneration, and inflammatory disorders. Automated segmentation of IRCs poses challenges owing to variations in the acquisition system scan intensities, speckle noise, and imaging artifacts. Several segmentation methods have been proposed in the literature for IRC segmentation on vendor-specific OCT images that lack generalizability across imaging systems. In this paper, we propose a fully convolutional network (FCN) model for vendor-independent IRC segmentation. The proposed method counteracts image noise variabilities and trains FCN models on OCT sub-images from the OPTIMA cyst segmentation challenge dataset (with four different vendor-specific images, namely, Cirrus, Nidek, Spectralis, and Topcon). Further, optimal data augmentation and model hyperparametrization are shown to prevent over-fitting for IRC area segmentation. The proposed method is evaluated on the test dataset with a recall/precision rate of 0.66/0.79 across imaging vendors. The Dice correlation coefficient of the proposed method outperforms that of the published algorithms in the OPTIMA cyst segmentation challenge with a Dice rate of 0.71 across the vendors. © 2013 IEEE.
Stack generalized deep ensemble learning for retinal layer segmentation in Optical Coherence Tomography images
(Elsevier Sp. z o.o., 2020) Anoop, B.N.; Pavan, R.; Girish, G.N.; Kothari, A.R.; Rajan, J.
Segmentation of retinal layers is a vital and important step in computerized processing and the study of retinal Optical Coherence Tomography (OCT) images. However, automatic segmentation of retinal layers is challenging due to the presence of noise, widely varying reflectivity of image components, variations in morphology and alignment of layers in the presence of retinal diseases. In this paper, we propose a Fully Convolutional Network (FCN) termed as DelNet based on a deep ensemble learning approach to selectively segment retinal layers from OCT scans. The proposed model is tested on a publicly available DUKE DME dataset. Comparative analysis with other state-of-the-art methods on a benchmark dataset shows that the performance of DelNet is superior to other methods. © 2020 Nalecz Institute of Biocybernetics and Biomedical Engineering of the Polish Academy of Sciences

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